PyMIF documentation

PyMIF (source code here) is a modular Python package to read, visualize, and write multiscale (pyramidal) microscopy image data from a variety of microscope platforms available at the Mesoscopic Imaging Facility (MIF) into the OME-NGFF (Zarr) format.

Demonstration of pymif usage. Data: near newborn mouse embryo (~1.5 cm long). Fluorescence signal: methylene blue + autofluorescence. Sample processed and imaged by Montserrat Coll at the Mesoscopic Imaging Facility. Video speed: 2.5X real speed.

Contents:

• PyMIF — Python code for users of the Mesoscopic Imaging Facility
  • 📦 Features
  • 🗂️ Project Structure
  • 🚀 Getting Started
• API Reference
  • pymif