.. PyMIF documentation master file, created by
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PyMIF documentation
===================

**PyMIF** (source code `here <https://github.com/grinic/pymif>`_) is a modular Python package to read, visualize, and write multiscale (pyramidal) 
microscopy image data from a variety of microscope platforms available at the 
`Mesoscopic Imaging Facility (MIF) <https://www.embl.org/groups/mesoscopic-imaging-facility>`_ 
into the `OME-NGFF (Zarr) <https://ngff.openmicroscopy.org/)>`_ format.

.. image:: ../documentation/demo.gif
   :alt: Demo
*Demonstration of pymif usage. Data: near newborn mouse embryo (~1.5 cm long). Fluorescence signal: methylene blue + autofluorescence. Sample processed and imaged by Montserrat Coll at the Mesoscopic Imaging Facility. Video speed: 2.5X real speed.*

.. toctree::
   :maxdepth: 2
   :caption: Contents:

   README.md