pymif.microscope_manager.utils.to_zarr

Attributes

DEFAULT_COLORS

Functions

to_zarr(path, data_levels, metadata[, compressor, ...])

Write image data and metadata to the specified path.

Module Contents

pymif.microscope_manager.utils.to_zarr.DEFAULT_COLORS = ['FF0000', '00FF00', '0000FF', 'FFFF00', 'FF00FF', '00FFFF', 'FFFFFF', '808080']

pymif.microscope_manager.utils.to_zarr.to_zarr(path: str, data_levels: List[dask.array.Array], metadata: Dict[str, Any], compressor: Any = None, compressor_level: int = 3, overwrite: bool = True, parallelize: bool = False)

Write image data and metadata to the specified path.

Parameters

pathstr

Destination path for the output data.

data_levelsList[da.Array]

List of Dask arrays representing image data.

metadataDict[str, Any]

Dictionary containing metadata information.

compressorAny

Type of compression used (default: None).

compressor_levelint

Compression level used (if compression is not None).

overwritebool

whether to overwrite existing data at Destination path (default: True).

parallelizebool

whether to use dask distribute to parallelize (default: False).