pymif.microscope_manager.utils.to_zarr

Attributes

`DEFAULT_COLORS`
`SPATIAL_AXES`

Functions

to_zarr(path, data_levels, metadata, *[, config])

Write a pyramid of dask arrays to an OME-Zarr root group.

Module Contents

pymif.microscope_manager.utils.to_zarr.DEFAULT_COLORS = ('FF0000', '00FF00', '0000FF', 'FFFF00', 'FF00FF', '00FFFF', 'FFFFFF', '808080')[source]

pymif.microscope_manager.utils.to_zarr.SPATIAL_AXES[source]

pymif.microscope_manager.utils.to_zarr.to_zarr(path: str | pathlib.Path, data_levels: Sequence[dask.array.Array], metadata: dict[str, Any], *, config: pymif.microscope_manager.utils.ngff.ZarrWriteConfig | None = None)[source]

Write a pyramid of dask arrays to an OME-Zarr root group.

Parameters

pathstr | Path: Destination zarr store.
data_levelssequence of dask.array.Array: Pyramid levels ordered from finest to coarsest resolution.
metadatadict: Normalized PyMIF metadata dictionary describing axes, scales, channel metadata and units.
configZarrWriteConfig | None: Output configuration controlling NGFF version, zarr format, overwrite behaviour and compression.